J3_6PPF_016

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

6PPF|1|A|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PPF_016 not in the Motif Atlas

Homologous match to J3_4WF9_022

Geometric discrepancy: 0.2675

The information below is about J3_4WF9_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6PPF|1|A|C|272
6PPF|1|A|A|273
6PPF|1|A|A|274
6PPF|1|A|A|275
6PPF|1|A|C|276
*
6PPF|1|A|G|295
6PPF|1|A|G|296
6PPF|1|A|G|297
6PPF|1|A|U|298
6PPF|1|A|U|299
6PPF|1|A|G|300
6PPF|1|A|U|301
6PPF|1|A|A|302
*
6PPF|1|A|U|416
6PPF|1|A|G|417

Current chains

Chain A

23S rRNA

Nearby chains