J3_6PPF_019

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

6PPF|1|A|A|1423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PPF_019 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.22

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

10

Unit IDs

6PPF|1|A|U|1383
6PPF|1|A|C|1384
6PPF|1|A|G|1385
6PPF|1|A|G|1386
6PPF|1|A|G|1387
6PPF|1|A|A|1388
6PPF|1|A|C|1389
*
6PPF|1|A|G|1420
6PPF|1|A|A|1421
6PPF|1|A|C|1422
6PPF|1|A|A|1423
6PPF|1|A|A|1424
*
6PPF|1|A|U|1441
6PPF|1|A|A|1442

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L23