J3_6PPF_020

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PPF_020 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.1048

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6PPF|1|A|G|1470
6PPF|1|A|G|1471
6PPF|1|A|G|1472
6PPF|1|A|A|1473
6PPF|1|A|C|1474
6PPF|1|A|G|1475
*
6PPF|1|A|C|1612
6PPF|1|A|C|1613
*
6PPF|1|A|G|1616
6PPF|1|A|A|1617
6PPF|1|A|A|1618
6PPF|1|A|A|1619
6PPF|1|A|A|1620
6PPF|1|A|G|1621
6PPF|1|A|C|1622

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2