J3_6PPF_021

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUGA*UCUAACC*GAGACAG

Length

18 nucleotides

Bulged bases

6PPF|1|A|A|2227

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6PPF_021 not in the Motif Atlas

Homologous match to J3_4WF9_018

Geometric discrepancy: 0.2216

The information below is about J3_4WF9_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60833.1

Basepair signature

cWW-F-F-F-tHH-F-cWW-F-cWW-cWW-F-F-F

Number of instances in this motif group

1

Unit IDs

6PPF|1|A|U|2120
6PPF|1|A|U|2121
6PPF|1|A|G|2122
6PPF|1|A|A|2123
*
6PPF|1|A|U|2224
6PPF|1|A|C|2225
6PPF|1|A|U|2226
6PPF|1|A|A|2227
6PPF|1|A|A|2228
6PPF|1|A|C|2229
6PPF|1|A|C|2230
*
6PPF|1|A|G|2251
6PPF|1|A|A|2252
6PPF|1|A|G|2253
6PPF|1|A|A|2254
6PPF|1|A|C|2255
6PPF|1|A|A|2256
6PPF|1|A|G|2257

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2