J3_6Q8Y_006
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCAG*CUAGUAA*UGAUUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Q8Y_006 not in the Motif Atlas
- Homologous match to J3_4V88_035
- Geometric discrepancy: 0.1462
- The information below is about J3_4V88_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.1
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6Q8Y|1|2|C|1161
6Q8Y|1|2|C|1162
6Q8Y|1|2|A|1163
6Q8Y|1|2|G|1164
*
6Q8Y|1|2|C|1581
6Q8Y|1|2|U|1582
6Q8Y|1|2|A|1583
6Q8Y|1|2|G|1584
6Q8Y|1|2|U|1585
6Q8Y|1|2|A|1586
6Q8Y|1|2|A|1587
*
6Q8Y|1|2|U|1609
6Q8Y|1|2|G|1610
6Q8Y|1|2|A|1611
6Q8Y|1|2|U|1612
6Q8Y|1|2|U|1613
6Q8Y|1|2|A|1614
6Q8Y|1|2|C|1615
6Q8Y|1|2|G|1616
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain B
- Rps5p
- Chain F
- 40S ribosomal protein S16-A
- Chain L
- 40S ribosomal protein S28-A
- Chain m
- Transfer RNA; tRNA
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