J3_6Q8Y_022
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAA*UGAUAAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 6Q8Y|1|BQ|U|1840, 6Q8Y|1|BQ|A|1841
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Q8Y_022 not in the Motif Atlas
- Homologous match to J3_5TBW_009
- Geometric discrepancy: 0.0666
- The information below is about J3_5TBW_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6Q8Y|1|BQ|G|1488
6Q8Y|1|BQ|A|1489
6Q8Y|1|BQ|A|1490
6Q8Y|1|BQ|A|1491
*
6Q8Y|1|BQ|U|1837
6Q8Y|1|BQ|G|1838
6Q8Y|1|BQ|A|1839
6Q8Y|1|BQ|U|1840
6Q8Y|1|BQ|A|1841
6Q8Y|1|BQ|A|1842
6Q8Y|1|BQ|C|1843
*
6Q8Y|1|BQ|G|1852
6Q8Y|1|BQ|U|1853
6Q8Y|1|BQ|C|1854
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AF
- 60S ribosomal protein L37-A
- Chain AL
- 60S ribosomal protein L39
- Chain BN
- 60S ribosomal protein L34-A
- Chain BS
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: