J3_6Q8Y_027
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 6Q8Y|1|BQ|A|2703
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Q8Y_027 not in the Motif Atlas
- Homologous match to J3_5TBW_013
- Geometric discrepancy: 0.0986
- The information below is about J3_5TBW_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6Q8Y|1|BQ|C|2664
6Q8Y|1|BQ|U|2665
6Q8Y|1|BQ|C|2666
*
6Q8Y|1|BQ|G|2690
6Q8Y|1|BQ|A|2691
6Q8Y|1|BQ|A|2692
*
6Q8Y|1|BQ|U|2701
6Q8Y|1|BQ|A|2702
6Q8Y|1|BQ|A|2703
6Q8Y|1|BQ|A|2704
6Q8Y|1|BQ|A|2705
6Q8Y|1|BQ|G|2706
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AG
- 60S ribosomal protein L11-B
- Chain BI
- 60S ribosomal protein L5
- Chain BJ
- 60S ribosomal protein L21-A
- Chain BR
- 5S ribosomal RNA; 5S rRNA
- Chain n
- Transfer RNA; tRNA
Coloring options: