J3_6Q8Y_028
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 6Q8Y|1|BQ|A|2887, 6Q8Y|1|BQ|U|2888
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Q8Y_028 not in the Motif Atlas
- Homologous match to J3_8C3A_011
- Geometric discrepancy: 0.0705
- The information below is about J3_8C3A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_98597.1
- Basepair signature
- cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 2
Unit IDs
6Q8Y|1|BQ|U|2886
6Q8Y|1|BQ|A|2887
6Q8Y|1|BQ|U|2888
6Q8Y|1|BQ|C|2889
*
6Q8Y|1|BQ|G|2914
6Q8Y|1|BQ|U|2915
6Q8Y|1|BQ|U|2916
*
6Q8Y|1|BQ|A|2930
6Q8Y|1|BQ|C|2931
6Q8Y|1|BQ|U|2932
6Q8Y|1|BQ|A|2933
6Q8Y|1|BQ|A|2934
6Q8Y|1|BQ|U|2935
6Q8Y|1|BQ|A|2936
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AB
- 60S ribosomal protein L23-A
- Chain AU
- 60S ribosomal protein L16-A
- Chain BA
- 60S ribosomal protein L3
Coloring options: