J3_6Q8Y_030
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCAUAU*AG*UG
- Length
- 10 nucleotides
- Bulged bases
- 6Q8Y|1|BR|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Q8Y_030 not in the Motif Atlas
- Homologous match to J3_5TBW_045
- Geometric discrepancy: 0.0902
- The information below is about J3_5TBW_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52398.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
6Q8Y|1|BR|C|9
6Q8Y|1|BR|C|10
6Q8Y|1|BR|A|11
6Q8Y|1|BR|U|12
6Q8Y|1|BR|A|13
6Q8Y|1|BR|U|14
*
6Q8Y|1|BR|A|66
6Q8Y|1|BR|G|67
*
6Q8Y|1|BR|U|111
6Q8Y|1|BR|G|112
Current chains
- Chain BR
- 5S ribosomal RNA
Nearby chains
- Chain BD
- 60S ribosomal protein L10
- Chain BI
- 60S ribosomal protein L5
- Chain BJ
- 60S ribosomal protein L21-A
- Chain BQ
- Large subunit ribosomal RNA; LSU rRNA
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