3D structure

PDB id
6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GCGGGAC*GGCAG*CC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6Q95_007 not in the Motif Atlas
Homologous match to J3_7RQB_009
Geometric discrepancy: 0.1495
The information below is about J3_7RQB_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_04858.2
Basepair signature
cWW-F-cWW-F-F-F-F-F-cWW
Number of instances in this motif group
3

Unit IDs

6Q95|1|1|G|1344
6Q95|1|1|C|1345
6Q95|1|1|G|1346
6Q95|1|1|G|1347
6Q95|1|1|G|1348
6Q95|1|1|A|1349
6Q95|1|1|C|1350
*
6Q95|1|1|G|1381
6Q95|1|1|G|1382
6Q95|1|1|C|1383
6Q95|1|1|A|1384
6Q95|1|1|G|1385
*
6Q95|1|1|C|1402
6Q95|1|1|C|1403

Current chains

Chain 1
23S RIBOSOMAL RNA

Nearby chains

Chain T
50S ribosomal protein L23
Chain d
50S ribosomal protein L34

Coloring options:


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