3D structure

PDB id
6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CUC*GAG*UAGAAG
Length
12 nucleotides
Bulged bases
6Q95|1|1|G|2334
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6Q95_010 not in the Motif Atlas
Homologous match to J3_7RQB_011
Geometric discrepancy: 0.1517
The information below is about J3_7RQB_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_91491.4
Basepair signature
cWW-F-tWW-tHW-cWW-F-cWW
Number of instances in this motif group
7

Unit IDs

6Q95|1|1|C|2295
6Q95|1|1|U|2296
6Q95|1|1|C|2297
*
6Q95|1|1|G|2321
6Q95|1|1|A|2322
6Q95|1|1|G|2323
*
6Q95|1|1|U|2332
6Q95|1|1|A|2333
6Q95|1|1|G|2334
6Q95|1|1|A|2335
6Q95|1|1|A|2336
6Q95|1|1|G|2337

Current chains

Chain 1
23S RIBOSOMAL RNA

Nearby chains

Chain 3
5S ribosomal RNA; 5S rRNA
Chain 7
Transfer RNA; tRNA
Chain E
50S ribosomal protein L5
Chain O
50S ribosomal protein L18
Chain W
50S ribosomal protein L27

Coloring options:


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