J3_6Q95_011

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

6Q95|1|1|A|2518, 6Q95|1|1|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Q95_011 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.146

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

6Q95|1|1|C|2517
6Q95|1|1|A|2518
6Q95|1|1|U|2519
6Q95|1|1|C|2520
*
6Q95|1|1|G|2545
6Q95|1|1|U|2546
6Q95|1|1|U|2547
*
6Q95|1|1|A|2561
6Q95|1|1|U|2562
6Q95|1|1|U|2563
6Q95|1|1|A|2564
6Q95|1|1|A|2565
6Q95|1|1|A|2566
6Q95|1|1|G|2567

Current chains

Chain 1

23S RIBOSOMAL RNA

Nearby chains

Chain K

50S ribosomal protein L14