J3_6Q95_023
3D structure
- PDB id
- 6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGC*GGACUGC*GAGGAAGGAG
- Length
- 20 nucleotides
- Bulged bases
- 6Q95|1|2|A|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Q95_023 not in the Motif Atlas
- Homologous match to J3_4LFB_018
- Geometric discrepancy: 0.1562
- The information below is about J3_4LFB_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6Q95|1|2|C|1116
6Q95|1|2|G|1117
6Q95|1|2|C|1118
*
6Q95|1|2|G|1155
6Q95|1|2|G|1156
6Q95|1|2|A|1157
6Q95|1|2|C|1158
6Q95|1|2|U|1159
6Q95|1|2|G|1160
6Q95|1|2|C|1161
*
6Q95|1|2|G|1175
6Q95|1|2|A|1176
6Q95|1|2|G|1177
6Q95|1|2|G|1178
6Q95|1|2|A|1179
6Q95|1|2|A|1180
6Q95|1|2|G|1181
6Q95|1|2|G|1182
6Q95|1|2|A|1183
6Q95|1|2|G|1184
Current chains
- Chain 2
- 16S RIBOSOMAL RNA
Nearby chains
- Chain g
- 30S ribosomal protein S2
- Chain l
- 30S ribosomal protein S7
- Chain n
- 30S ribosomal protein S9
- Chain o
- 30S ribosomal protein S10
- Chain s
- 30S ribosomal protein S14 type Z
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