3D structure

PDB id
6Q95 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GGGACG*CC*GAAAAGC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6Q95_028 not in the Motif Atlas
Homologous match to J3_9DFE_013
Geometric discrepancy: 0.0917
The information below is about J3_9DFE_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_34864.2
Basepair signature
cWW-F-cWW-F-tHH-F-tHS-tHS-cWW
Number of instances in this motif group
4

Unit IDs

6Q95|1|1|G|1424
6Q95|1|1|G|1425
6Q95|1|1|G|1426
6Q95|1|1|A|1427
6Q95|1|1|C|1428
6Q95|1|1|G|1429
*
6Q95|1|1|C|1564
6Q95|1|1|C|1565
*
6Q95|1|1|G|1568
6Q95|1|1|A|1569
6Q95|1|1|A|1570
6Q95|1|1|A|1571
6Q95|1|1|A|1572
6Q95|1|1|G|1573
6Q95|1|1|C|1574

Current chains

Chain 1
23S RIBOSOMAL RNA

Nearby chains

Chain B
50S ribosomal protein L2

Coloring options:


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