J3_6Q95_029

3D structure

PDB id

6Q95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in A site of T. thermophilus 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

6Q95|1|2|C|48, 6Q95|1|2|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Q95_029 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.1053

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6Q95|1|2|G|46
6Q95|1|2|C|47
6Q95|1|2|C|48
6Q95|1|2|U|49
6Q95|1|2|A|50
6Q95|1|2|A|51
6Q95|1|2|G|52
*
6Q95|1|2|U|359
6Q95|1|2|A|360
6Q95|1|2|G|361
6Q95|1|2|G|362
6Q95|1|2|A|363
6Q95|1|2|A|364
6Q95|1|2|U|365
6Q95|1|2|C|366
6Q95|1|2|U|367
*
6Q95|1|2|A|393
6Q95|1|2|G|394
6Q95|1|2|C|395

Current chains

Chain 2

16S RIBOSOMAL RNA

Nearby chains

Chain q

30S ribosomal protein S12

Chain u

30S ribosomal protein S16