J3_6Q97_045
3D structure
- PDB id
- 6Q97 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUG*CUAAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- 6Q97|1|1|A|2198
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Q97_045 not in the Motif Atlas
- Homologous match to J3_5J7L_044
- Geometric discrepancy: 0.1624
- The information below is about J3_5J7L_044
- Detailed Annotation
- Kink-turn 3-way junction
- Broad Annotation
- No text annotation
- Motif group
- J3_89368.5
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
6Q97|1|1|C|2091
6Q97|1|1|U|2092
6Q97|1|1|G|2093
*
6Q97|1|1|C|2196
6Q97|1|1|U|2197
6Q97|1|1|A|2198
6Q97|1|1|A|2199
6Q97|1|1|C|2200
*
6Q97|1|1|G|2223
6Q97|1|1|G|2224
6Q97|1|1|A|2225
6Q97|1|1|C|2226
6Q97|1|1|A|2227
6Q97|1|1|G|2228
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L2
- Chain G
- 50S ribosomal protein L9
- Chain X
- 50S ribosomal protein L28
Coloring options: