J3_6Q98_031

3D structure

PDB id

6Q98 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound in P site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

6Q98|1|2|C|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Q98_031 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.3176

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

6Q98|1|2|C|936
6Q98|1|2|A|937
6Q98|1|2|A|938
6Q98|1|2|G|939
*
6Q98|1|2|C|1344
6Q98|1|2|U|1345
6Q98|1|2|A|1346
6Q98|1|2|G|1347
6Q98|1|2|U|1348
6Q98|1|2|A|1349
6Q98|1|2|A|1350
*
6Q98|1|2|U|1372
6Q98|1|2|G|1373
6Q98|1|2|A|1374
6Q98|1|2|A|1375
6Q98|1|2|U|1376
6Q98|1|2|A|1377
6Q98|1|2|C|1378
6Q98|1|2|G|1379

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S7

Chain n

30S ribosomal protein S9