J3_6Q9A_007

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

6Q9A|1|1|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Q9A_007 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1235

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

6Q9A|1|1|C|1306
6Q9A|1|1|A|1307
6Q9A|1|1|A|1308
6Q9A|1|1|G|1309
*
6Q9A|1|1|C|1605
6Q9A|1|1|C|1606
6Q9A|1|1|C|1607
6Q9A|1|1|A|1608
6Q9A|1|1|A|1609
6Q9A|1|1|A|1610
6Q9A|1|1|C|1611
*
6Q9A|1|1|G|1620
6Q9A|1|1|U|1621
6Q9A|1|1|G|1622

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L34