J3_6Q9A_017

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6Q9A|1|2|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6Q9A_017 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0994

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6Q9A|1|2|C|826
6Q9A|1|2|U|827
6Q9A|1|2|U|828
6Q9A|1|2|G|829
*
6Q9A|1|2|C|857
6Q9A|1|2|G|858
6Q9A|1|2|G|859
6Q9A|1|2|A|860
6Q9A|1|2|G|861
*
6Q9A|1|2|C|868
6Q9A|1|2|G|869
6Q9A|1|2|U|870
6Q9A|1|2|U|871
6Q9A|1|2|A|872
6Q9A|1|2|A|873
6Q9A|1|2|G|874

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S2

Chain m

30S ribosomal protein S8

Chain z

30S ribosomal protein S21