J3_6Q9A_019
3D structure
- PDB id
- 6Q9A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UGGA*UAC*GGAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Q9A_019 not in the Motif Atlas
- Homologous match to J3_4LFB_003
- Geometric discrepancy: 0.1179
- The information below is about J3_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44359.1
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6Q9A|1|2|U|943
6Q9A|1|2|G|944
6Q9A|1|2|G|945
6Q9A|1|2|A|946
*
6Q9A|1|2|U|1235
6Q9A|1|2|A|1236
6Q9A|1|2|C|1237
*
6Q9A|1|2|G|1337
6Q9A|1|2|G|1338
6Q9A|1|2|A|1339
6Q9A|1|2|A|1340
Current chains
- Chain 2
- 16S ribosomal RNA
Nearby chains
- Chain 7
- Transfer RNA; tRNA
- Chain l
- 30S ribosomal protein S7
- Chain n
- 30S ribosomal protein S9
- Chain r
- 30S ribosomal protein S13
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