J3_6Q9A_027
3D structure
- PDB id
- 6Q9A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
- Length
- 28 nucleotides
- Bulged bases
- 6Q9A|1|1|A|504, 6Q9A|1|1|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6Q9A_027 not in the Motif Atlas
- Homologous match to J3_4WF9_011
- Geometric discrepancy: 0.1265
- The information below is about J3_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
6Q9A|1|1|G|30
6Q9A|1|1|C|31
*
6Q9A|1|1|G|474
6Q9A|1|1|C|475
6Q9A|1|1|G|476
6Q9A|1|1|A|477
6Q9A|1|1|A|478
6Q9A|1|1|A|479
6Q9A|1|1|A|480
6Q9A|1|1|G|481
6Q9A|1|1|A|482
6Q9A|1|1|A|483
6Q9A|1|1|C|484
*
6Q9A|1|1|G|496
6Q9A|1|1|A|497
6Q9A|1|1|G|498
6Q9A|1|1|U|499
6Q9A|1|1|G|500
6Q9A|1|1|A|501
6Q9A|1|1|A|502
6Q9A|1|1|A|503
6Q9A|1|1|A|504
6Q9A|1|1|A|505
6Q9A|1|1|G|506
6Q9A|1|1|A|507
6Q9A|1|1|A|508
6Q9A|1|1|C|509
6Q9A|1|1|C|510
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 6
- Nascent peptide
- Chain Q
- 50S ribosomal protein L20
- Chain S
- 50S ribosomal protein L22
- Chain U
- 50S ribosomal protein L24
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