3D structure

PDB id
6QDW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
Experimental method
ELECTRON MICROSCOPY
Resolution
2.83 Å

Loop

Sequence
GC*GCGAAAAG*CC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6QDW_002 not in the Motif Atlas
Homologous match to J3_5J7L_036
Geometric discrepancy: 0.067
The information below is about J3_5J7L_036
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_60031.2
Basepair signature
cWW-cWW-cWW-tWH-tSH-F-F
Number of instances in this motif group
7

Unit IDs

6QDW|1|b|G|30
6QDW|1|b|C|31
*
6QDW|1|b|G|474
6QDW|1|b|C|475
6QDW|1|b|G|476
6QDW|1|b|A|477
6QDW|1|b|A|478
6QDW|1|b|A|479
6QDW|1|b|A|480
6QDW|1|b|G|481
*
6QDW|1|b|C|509
6QDW|1|b|C|510

Current chains

Chain b
23S rRNA

Nearby chains

Chain q
50S ribosomal protein L20
Chain u
50S ribosomal protein L24

Coloring options:


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