J3_6QDW_008

3D structure

PDB id

6QDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6QDW_008 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0611

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6QDW|1|b|C|2095
6QDW|1|b|U|2096
6QDW|1|b|G|2097
*
6QDW|1|b|C|2200
6QDW|1|b|U|2201
6QDW|1|b|A|2202
6QDW|1|b|A|2203
6QDW|1|b|C|2204
*
6QDW|1|b|G|2227
6QDW|1|b|G|2228
6QDW|1|b|A|2229
6QDW|1|b|C|2230
6QDW|1|b|A|2231
6QDW|1|b|G|2232

Current chains

Chain b

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L28

Chain c

50S ribosomal protein L2

Chain h

50S ribosomal protein L9