J3_6QDW_008
3D structure
- PDB id
- 6QDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- CUG*CUAAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6QDW_008 not in the Motif Atlas
- Homologous match to J3_5J7L_044
- Geometric discrepancy: 0.0611
- The information below is about J3_5J7L_044
- Detailed Annotation
- Kink-turn in J3
- Broad Annotation
- No text annotation
- Motif group
- J3_89368.5
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
6QDW|1|b|C|2095
6QDW|1|b|U|2096
6QDW|1|b|G|2097
*
6QDW|1|b|C|2200
6QDW|1|b|U|2201
6QDW|1|b|A|2202
6QDW|1|b|A|2203
6QDW|1|b|C|2204
*
6QDW|1|b|G|2227
6QDW|1|b|G|2228
6QDW|1|b|A|2229
6QDW|1|b|C|2230
6QDW|1|b|A|2231
6QDW|1|b|G|2232
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 0
- 50S ribosomal protein L28
- Chain c
- 50S ribosomal protein L2
- Chain h
- 50S ribosomal protein L9
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