3D structure

PDB id
6QDW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
Experimental method
ELECTRON MICROSCOPY
Resolution
2.83 Å

Loop

Sequence
GAAC*GUUGAU*AAUGAAC
Length
17 nucleotides
Bulged bases
6QDW|1|b|U|2837, 6QDW|1|b|A|2839
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6QDW_012 not in the Motif Atlas
Homologous match to J3_5J7L_048
Geometric discrepancy: 0.1753
The information below is about J3_5J7L_048
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_64069.1
Basepair signature
cWW-tHS-F-F-F-cWW-cWW-F-F
Number of instances in this motif group
1

Unit IDs

6QDW|1|b|G|2816
6QDW|1|b|A|2817
6QDW|1|b|A|2818
6QDW|1|b|C|2819
*
6QDW|1|b|G|2835
6QDW|1|b|U|2836
6QDW|1|b|U|2837
6QDW|1|b|G|2838
6QDW|1|b|A|2839
6QDW|1|b|U|2840
*
6QDW|1|b|A|2886
6QDW|1|b|A|2887
6QDW|1|b|U|2888
6QDW|1|b|G|2889
6QDW|1|b|A|2890
6QDW|1|b|A|2891
6QDW|1|b|C|2892

Current chains

Chain b
23S rRNA

Nearby chains

Chain 3
50S ribosomal protein L32
Chain d
50S ribosomal protein L3
Chain n
50S ribosomal protein L17
Chain s
50S ribosomal protein L22

Coloring options:


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