J3_6QDW_012
3D structure
- PDB id
- 6QDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- GAAC*GUUGAU*AAUGAAC
- Length
- 17 nucleotides
- Bulged bases
- 6QDW|1|b|U|2837, 6QDW|1|b|A|2839
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6QDW_012 not in the Motif Atlas
- Homologous match to J3_5J7L_048
- Geometric discrepancy: 0.1753
- The information below is about J3_5J7L_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64069.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
6QDW|1|b|G|2816
6QDW|1|b|A|2817
6QDW|1|b|A|2818
6QDW|1|b|C|2819
*
6QDW|1|b|G|2835
6QDW|1|b|U|2836
6QDW|1|b|U|2837
6QDW|1|b|G|2838
6QDW|1|b|A|2839
6QDW|1|b|U|2840
*
6QDW|1|b|A|2886
6QDW|1|b|A|2887
6QDW|1|b|U|2888
6QDW|1|b|G|2889
6QDW|1|b|A|2890
6QDW|1|b|A|2891
6QDW|1|b|C|2892
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L32
- Chain d
- 50S ribosomal protein L3
- Chain n
- 50S ribosomal protein L17
- Chain s
- 50S ribosomal protein L22
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