J3_6QDW_016

3D structure

PDB id

6QDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 50S ribosomal subunit at 2.83 Angstroms with modeled GBC SecM peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.83 Å

Loop

Sequence

UCGACCC*GGAAA*UA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6QDW_016 not in the Motif Atlas

Homologous match to J3_9DFE_012

Geometric discrepancy: 0.565

The information below is about J3_9DFE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

6QDW|1|b|U|1346
6QDW|1|b|C|1347
6QDW|1|b|G|1348
6QDW|1|b|A|1349
6QDW|1|b|C|1350
6QDW|1|b|C|1351
6QDW|1|b|C|1352
*
6QDW|1|b|G|1383
6QDW|1|b|G|1384
6QDW|1|b|A|1385
6QDW|1|b|A|1386
6QDW|1|b|A|1387
*
6QDW|1|b|U|1404
6QDW|1|b|A|1405

Current chains

Chain b

23S rRNA

Nearby chains

Chain t

50S ribosomal protein L23