J3_6QIK_006

3D structure

PDB id

6QIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UU*AGAAG*CAUUUGA

Length

14 nucleotides

Bulged bases

6QIK|1|A|A|1065, 6QIK|1|A|U|1094, 6QIK|1|A|U|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QIK|1|A|U|986
6QIK|1|A|U|987
*
6QIK|1|A|A|1062
6QIK|1|A|G|1063
6QIK|1|A|A|1064
6QIK|1|A|A|1065
6QIK|1|A|G|1066
*
6QIK|1|A|C|1092
6QIK|1|A|A|1093
6QIK|1|A|U|1094
6QIK|1|A|U|1095
6QIK|1|A|U|1096
6QIK|1|A|G|1097
6QIK|1|A|A|1098

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain T

60S ribosomal protein L21-A

Chain a

60S ribosomal protein L29

Chain b

60S ribosomal protein L7-A