J3_6QIK_014
3D structure
- PDB id
- 6QIK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 6QIK|1|A|A|2887, 6QIK|1|A|U|2888
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6QIK_014 not in the Motif Atlas
- Homologous match to J3_8C3A_011
- Geometric discrepancy: 0.073
- The information below is about J3_8C3A_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_98597.1
- Basepair signature
- cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 2
Unit IDs
6QIK|1|A|U|2886
6QIK|1|A|A|2887
6QIK|1|A|U|2888
6QIK|1|A|C|2889
*
6QIK|1|A|G|2914
6QIK|1|A|U|2915
6QIK|1|A|U|2916
*
6QIK|1|A|A|2930
6QIK|1|A|C|2931
6QIK|1|A|U|2932
6QIK|1|A|A|2933
6QIK|1|A|A|2934
6QIK|1|A|U|2935
6QIK|1|A|A|2936
Current chains
- Chain A
- 25S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L3
- Chain J
- 60S ribosomal protein L16-B
- Chain L
- 60S ribosomal protein L23-A
- Chain w
- 60S ribosomal export protein NMD3
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