J3_6QNQ_057

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

6QNQ|1|14|U|504, 6QNQ|1|14|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6QNQ_057 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.1054

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6QNQ|1|14|G|30
6QNQ|1|14|C|31
*
6QNQ|1|14|G|474
6QNQ|1|14|U|475
6QNQ|1|14|G|476
6QNQ|1|14|A|477
6QNQ|1|14|A|478
6QNQ|1|14|A|479
6QNQ|1|14|A|480
6QNQ|1|14|G|481
6QNQ|1|14|A|482
6QNQ|1|14|A|483
6QNQ|1|14|C|484
*
6QNQ|1|14|G|496
6QNQ|1|14|A|497
6QNQ|1|14|G|498
6QNQ|1|14|U|499
6QNQ|1|14|G|500
6QNQ|1|14|A|501
6QNQ|1|14|A|502
6QNQ|1|14|A|503
6QNQ|1|14|U|504
6QNQ|1|14|A|505
6QNQ|1|14|G|506
6QNQ|1|14|A|507
6QNQ|1|14|G|508
6QNQ|1|14|C|509
6QNQ|1|14|C|510

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 85

50S ribosomal protein L20

Chain A5

50S ribosomal protein L22

Chain C5

50S ribosomal protein L24