J3_6QNQ_080

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6QNQ_080 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.2108

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6QNQ|1|1G|C|990
6QNQ|1|1G|U|991
6QNQ|1|1G|U|992
6QNQ|1|1G|G|993
6QNQ|1|1G|A|994
6QNQ|1|1G|C|995
6QNQ|1|1G|A|996
6QNQ|1|1G|U|997
*
6QNQ|1|1G|A|1044
6QNQ|1|1G|C|1045
6QNQ|1|1G|A|1046
6QNQ|1|1G|G|1047
*
6QNQ|1|1G|C|1210
6QNQ|1|1G|U|1211
6QNQ|1|1G|U|1212
6QNQ|1|1G|A|1213
6QNQ|1|1G|C|1214
6QNQ|1|1G|G|1215

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 22

30S ribosomal protein S3

Chain 5A

30S ribosomal protein S14 type Z