J3_6QNR_021

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCGGGAC*GGCAG*CC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6QNR_021 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.1248

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6QNR|1|14|G|1344
6QNR|1|14|C|1345
6QNR|1|14|G|1346
6QNR|1|14|G|1347
6QNR|1|14|G|1348
6QNR|1|14|A|1349
6QNR|1|14|C|1350
*
6QNR|1|14|G|1381
6QNR|1|14|G|1382
6QNR|1|14|C|1383
6QNR|1|14|A|1384
6QNR|1|14|G|1385
*
6QNR|1|14|C|1402
6QNR|1|14|C|1403

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L23

Chain L5

50S ribosomal protein L34