J3_6QNR_034

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6QNR_034 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.2561

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_84394.1

Basepair signature

cWW-tWH-F-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

6QNR|1|1G|C|990
6QNR|1|1G|U|991
6QNR|1|1G|U|992
6QNR|1|1G|G|993
*
6QNR|1|1G|C|1045
6QNR|1|1G|A|1046
6QNR|1|1G|G|1047
*
6QNR|1|1G|C|1210
6QNR|1|1G|U|1211
6QNR|1|1G|U|1212
6QNR|1|1G|A|1213
6QNR|1|1G|C|1214
6QNR|1|1G|G|1215

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 5A

30S ribosomal protein S14 type Z