J3_6QNR_040

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6QNR_040 not in the Motif Atlas

Homologous match to J3_7RQB_001

Geometric discrepancy: 0.0637

The information below is about J3_7RQB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_65070.3

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

4

Unit IDs

6QNR|1|1H|G|30
6QNR|1|1H|C|31
*
6QNR|1|1H|G|501
6QNR|1|1H|U|502
6QNR|1|1H|G|503
6QNR|1|1H|A|504
6QNR|1|1H|A|505
6QNR|1|1H|A|506
6QNR|1|1H|A|507
6QNR|1|1H|G|508
*
6QNR|1|1H|C|535
6QNR|1|1H|C|536

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain C8

50S ribosomal protein L20

Chain E8

50S ribosomal protein L22

Chain G8

50S ribosomal protein L24