J3_6QNR_048

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6QNR_048 not in the Motif Atlas

Homologous match to J3_7RQB_010

Geometric discrepancy: 0.0637

The information below is about J3_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.3

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6QNR|1|1H|U|2114
6QNR|1|1H|U|2115
6QNR|1|1H|G|2116
*
6QNR|1|1H|C|2219
6QNR|1|1H|U|2220
6QNR|1|1H|A|2221
6QNR|1|1H|A|2222
6QNR|1|1H|C|2223
*
6QNR|1|1H|G|2236
6QNR|1|1H|G|2237
6QNR|1|1H|A|2238
6QNR|1|1H|C|2239
6QNR|1|1H|A|2240
6QNR|1|1H|G|2241

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2

Chain 61

50S ribosomal protein L9

Chain J8

50S ribosomal protein L28