J3_6QNR_050

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

6QNR|1|1H|A|2531, 6QNR|1|1H|U|2532

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6QNR_050 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.0651

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

6QNR|1|1H|C|2530
6QNR|1|1H|A|2531
6QNR|1|1H|U|2532
6QNR|1|1H|C|2533
*
6QNR|1|1H|G|2558
6QNR|1|1H|U|2559
6QNR|1|1H|U|2560
*
6QNR|1|1H|A|2574
6QNR|1|1H|U|2575
6QNR|1|1H|U|2576
6QNR|1|1H|A|2577
6QNR|1|1H|A|2578
6QNR|1|1H|A|2579
6QNR|1|1H|G|2580

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 68

50S ribosomal protein L14