J3_6QNR_059
3D structure
- PDB id
- 6QNR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome elongation complex (EC) with experimentally assigned potassium ions
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 6QNR|1|14|C|34, 6QNR|1|14|U|448, 6QNR|1|14|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6QNR_059 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.2544
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
6QNR|1|14|C|32
6QNR|1|14|U|33
6QNR|1|14|C|34
6QNR|1|14|G|35
*
6QNR|1|14|C|445
6QNR|1|14|G|446
6QNR|1|14|A|447
6QNR|1|14|U|448
6QNR|1|14|A|449
6QNR|1|14|G|450
6QNR|1|14|C|451
6QNR|1|14|G|452
6QNR|1|14|C|453
6QNR|1|14|A|454
6QNR|1|14|C|455
6QNR|1|14|C|456
6QNR|1|14|A|457
6QNR|1|14|G|458
6QNR|1|14|U|459
6QNR|1|14|A|460
6QNR|1|14|C|461
*
6QNR|1|14|G|468
6QNR|1|14|G|469
6QNR|1|14|A|470
6QNR|1|14|A|471
6QNR|1|14|A|472
6QNR|1|14|G|473
Current chains
- Chain 14
- 23S ribosomal RNA
Nearby chains
- Chain 39
- 50S ribosomal protein L4
- Chain 85
- 50S ribosomal protein L20
- Chain B5
- 50S ribosomal protein L23
- Chain L5
- 50S ribosomal protein L34
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