J3_6QNR_071
3D structure
- PDB id
- 6QNR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome elongation complex (EC) with experimentally assigned potassium ions
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 6QNR|1|1H|C|34, 6QNR|1|1H|U|475, 6QNR|1|1H|C|483
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6QNR_071 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.1809
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
6QNR|1|1H|C|32
6QNR|1|1H|U|33
6QNR|1|1H|C|34
6QNR|1|1H|G|35
*
6QNR|1|1H|C|472
6QNR|1|1H|G|473
6QNR|1|1H|A|474
6QNR|1|1H|U|475
6QNR|1|1H|A|476
6QNR|1|1H|G|477
6QNR|1|1H|C|478
6QNR|1|1H|G|479
6QNR|1|1H|C|480
6QNR|1|1H|A|481
6QNR|1|1H|C|482
6QNR|1|1H|C|483
6QNR|1|1H|A|484
6QNR|1|1H|G|485
6QNR|1|1H|U|486
6QNR|1|1H|A|487
6QNR|1|1H|C|488
*
6QNR|1|1H|G|495
6QNR|1|1H|G|496
6QNR|1|1H|A|497
6QNR|1|1H|A|498
6QNR|1|1H|A|499
6QNR|1|1H|G|500
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 31
- 50S ribosomal protein L4
- Chain C8
- 50S ribosomal protein L20
- Chain F8
- 50S ribosomal protein L23
- Chain P8
- 50S ribosomal protein L34
Coloring options: