J3_6QNR_072

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAG*CGCCAGAGAG*CGUAG

Length

20 nucleotides

Bulged bases

6QNR|1|1H|G|346

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6QNR_072 not in the Motif Atlas

Homologous match to J3_9DFE_006

Geometric discrepancy: 0.0628

The information below is about J3_9DFE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

6QNR|1|1H|C|322
6QNR|1|1H|G|323
6QNR|1|1H|A|324
6QNR|1|1H|A|325
6QNR|1|1H|G|326
*
6QNR|1|1H|C|341
6QNR|1|1H|G|342
6QNR|1|1H|C|343
6QNR|1|1H|C|344
6QNR|1|1H|A|345
6QNR|1|1H|G|346
6QNR|1|1H|A|347
6QNR|1|1H|G|348
6QNR|1|1H|A|349
6QNR|1|1H|G|350
*
6QNR|1|1H|C|362
6QNR|1|1H|G|363
6QNR|1|1H|U|364
6QNR|1|1H|A|365
6QNR|1|1H|G|366

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 31

50S ribosomal protein L4

Chain G8

50S ribosomal protein L24