J3_6QNR_073

3D structure

PDB id

6QNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome elongation complex (EC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6QNR_073 not in the Motif Atlas

Homologous match to J3_9DFE_013

Geometric discrepancy: 0.0643

The information below is about J3_9DFE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

6QNR|1|1H|G|1471
6QNR|1|1H|G|1472
6QNR|1|1H|G|1473
6QNR|1|1H|A|1474
6QNR|1|1H|C|1475
6QNR|1|1H|G|1476
*
6QNR|1|1H|C|1612
6QNR|1|1H|C|1613
*
6QNR|1|1H|G|1616
6QNR|1|1H|A|1617
6QNR|1|1H|A|1618
6QNR|1|1H|A|1619
6QNR|1|1H|A|1620
6QNR|1|1H|G|1621
6QNR|1|1H|C|1622

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L2