J3_6QT0_028
3D structure
- PDB id
- 6QT0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 6QT0|1|y|U|60, 6QT0|1|y|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6QT0_028 not in the Motif Atlas
- Homologous match to J3_8P9A_067
- Geometric discrepancy: 0.1004
- The information below is about J3_8P9A_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.1
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
6QT0|1|y|A|44
6QT0|1|y|C|45
*
6QT0|1|y|G|58
6QT0|1|y|A|59
6QT0|1|y|U|60
6QT0|1|y|A|61
6QT0|1|y|C|62
6QT0|1|y|G|63
6QT0|1|y|U|64
*
6QT0|1|y|A|96
6QT0|1|y|A|97
6QT0|1|y|U|98
6QT0|1|y|C|99
6QT0|1|y|U|100
Current chains
- Chain y
- 5.8S rRNA
Nearby chains
- Chain W
- 60S ribosomal protein L25
- Chain Z
- 60S ribosomal protein L35-A
- Chain i
- 60S ribosomal protein L37-A
- Chain k
- 60S ribosomal protein L39
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