J3_6QTZ_006
3D structure
- PDB id
- 6QTZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UU*AGAAG*CAUUUGA
- Length
- 14 nucleotides
- Bulged bases
- 6QTZ|1|A|A|1065, 6QTZ|1|A|U|1094, 6QTZ|1|A|U|1095
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6QTZ_006 not in the Motif Atlas
- Homologous match to J3_8C3A_051
- Geometric discrepancy: 0.551
- The information below is about J3_8C3A_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11066.3
- Basepair signature
- cWW-cSS-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6QTZ|1|A|U|986
6QTZ|1|A|U|987
*
6QTZ|1|A|A|1062
6QTZ|1|A|G|1063
6QTZ|1|A|A|1064
6QTZ|1|A|A|1065
6QTZ|1|A|G|1066
*
6QTZ|1|A|C|1092
6QTZ|1|A|A|1093
6QTZ|1|A|U|1094
6QTZ|1|A|U|1095
6QTZ|1|A|U|1096
6QTZ|1|A|G|1097
6QTZ|1|A|A|1098
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain T
- 60S ribosomal protein L21-A
- Chain a
- 60S ribosomal protein L29
- Chain b
- 60S ribosomal protein L7-A
Coloring options: