J3_6QTZ_022
3D structure
- PDB id
- 6QTZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AGAUGG*CGUUUCAAAGGCC*GCCACCAU
- Length
- 27 nucleotides
- Bulged bases
- 6QTZ|1|A|C|1556, 6QTZ|1|A|A|1558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6QTZ_022 not in the Motif Atlas
- Homologous match to J3_8P9A_056
- Geometric discrepancy: 0.3406
- The information below is about J3_8P9A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38098.1
- Basepair signature
- cWW-tSH-tWH-tWW-F-tHS-F-cWW-F-F-F-F-F-F-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
6QTZ|1|A|A|1537
6QTZ|1|A|G|1538
6QTZ|1|A|A|1539
6QTZ|1|A|U|1540
6QTZ|1|A|G|1541
6QTZ|1|A|G|1542
*
6QTZ|1|A|C|1551
6QTZ|1|A|G|1552
6QTZ|1|A|U|1553
6QTZ|1|A|U|1554
6QTZ|1|A|U|1555
6QTZ|1|A|C|1556
6QTZ|1|A|A|1557
6QTZ|1|A|A|1558
6QTZ|1|A|A|1559
6QTZ|1|A|G|1560
6QTZ|1|A|G|1561
6QTZ|1|A|C|1562
6QTZ|1|A|C|1563
*
6QTZ|1|A|G|1577
6QTZ|1|A|C|1578
6QTZ|1|A|C|1579
6QTZ|1|A|A|1580
6QTZ|1|A|C|1581
6QTZ|1|A|C|1582
6QTZ|1|A|A|1583
6QTZ|1|A|U|1584
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L2-A
- Chain H
- 60S ribosomal protein L8-A
- Chain O
- 60S ribosomal protein L15-A
- Chain W
- 60S ribosomal protein L25
- Chain i
- 60S ribosomal protein L37-A
- Chain y
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: