J3_6QTZ_024

3D structure

PDB id

6QTZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGACG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6QTZ_024 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.1101

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6QTZ|1|A|A|1654
6QTZ|1|A|G|1655
6QTZ|1|A|A|1656
6QTZ|1|A|C|1657
6QTZ|1|A|G|1658
*
6QTZ|1|A|C|1791
6QTZ|1|A|C|1792
*
6QTZ|1|A|G|1796
6QTZ|1|A|A|1797
6QTZ|1|A|A|1798
6QTZ|1|A|A|1799
6QTZ|1|A|A|1800
6QTZ|1|A|U|1801

Current chains

Chain A

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L2-A

Chain g

60S ribosomal protein L34-A

Chain m

60S ribosomal protein L43-A