J3_6QUL_007

3D structure

PDB id

6QUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

6QUL|1|A|C|1607, 6QUL|1|A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6QUL_007 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.3671

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_71677.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6QUL|1|A|C|1306
6QUL|1|A|A|1307
6QUL|1|A|A|1308
6QUL|1|A|G|1309
*
6QUL|1|A|C|1605
6QUL|1|A|C|1606
6QUL|1|A|C|1607
6QUL|1|A|A|1608
6QUL|1|A|A|1609
6QUL|1|A|A|1610
6QUL|1|A|C|1611
*
6QUL|1|A|G|1620
6QUL|1|A|U|1621
6QUL|1|A|G|1622

Current chains

Chain A

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L34