3D structure

PDB id
6QUL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a bacterial 50S ribosomal subunit in complex with the novel quinoxolidinone antibiotic cadazolid
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
GC*GCGAAAAGAAC*GAGUGAAAAAGAACC
Length
28 nucleotides
Bulged bases
6QUL|1|A|A|504, 6QUL|1|A|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6QUL_015 not in the Motif Atlas
Homologous match to J3_4WF9_011
Geometric discrepancy: 0.1103
The information below is about J3_4WF9_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

6QUL|1|A|G|30
6QUL|1|A|C|31
*
6QUL|1|A|G|474
6QUL|1|A|C|475
6QUL|1|A|G|476
6QUL|1|A|A|477
6QUL|1|A|A|478
6QUL|1|A|A|479
6QUL|1|A|A|480
6QUL|1|A|G|481
6QUL|1|A|A|482
6QUL|1|A|A|483
6QUL|1|A|C|484
*
6QUL|1|A|G|496
6QUL|1|A|A|497
6QUL|1|A|G|498
6QUL|1|A|U|499
6QUL|1|A|G|500
6QUL|1|A|A|501
6QUL|1|A|A|502
6QUL|1|A|A|503
6QUL|1|A|A|504
6QUL|1|A|A|505
6QUL|1|A|G|506
6QUL|1|A|A|507
6QUL|1|A|A|508
6QUL|1|A|C|509
6QUL|1|A|C|510

Current chains

Chain A
23S rRNA

Nearby chains

Chain R
50S ribosomal protein L20
Chain T
50S ribosomal protein L22
Chain V
50S ribosomal protein L24

Coloring options:


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