J3_6QZP_007

3D structure

PDB id

6QZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution cryo-EM structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAG*CCAUAUC*GUC

Length

14 nucleotides

Bulged bases

6QZP|1|L5|U|2788, 6QZP|1|L5|A|2789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6QZP_007 not in the Motif Atlas

Homologous match to J3_5TBW_009

Geometric discrepancy: 0.0908

The information below is about J3_5TBW_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6QZP|1|L5|G|2402
6QZP|1|L5|A|2403
6QZP|1|L5|A|2404
6QZP|1|L5|G|2405
*
6QZP|1|L5|C|2785
6QZP|1|L5|C|2786
6QZP|1|L5|A|2787
6QZP|1|L5|U|2788
6QZP|1|L5|A|2789
6QZP|1|L5|U|2790
6QZP|1|L5|C|2791
*
6QZP|1|L5|G|2800
6QZP|1|L5|U|2801
6QZP|1|L5|C|2802

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain Lg

60S ribosomal protein L34

Chain Lj

60S ribosomal protein L37

Chain Ll

60S ribosomal protein L39