J3_6R5Q_008

3D structure

PDB id

6R5Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of XBP1u-paused ribosome nascent chain complex (post-state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

6R5Q|1|5|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6R5Q_008 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.1228

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

6R5Q|1|5|C|2393
6R5Q|1|5|G|2394
6R5Q|1|5|A|2395
6R5Q|1|5|A|2396
6R5Q|1|5|G|2397
6R5Q|1|5|U|2398
6R5Q|1|5|G|2399
*
6R5Q|1|5|C|2805
6R5Q|1|5|A|2806
6R5Q|1|5|A|2807
*
6R5Q|1|5|U|2819
6R5Q|1|5|C|2820
6R5Q|1|5|U|2821
6R5Q|1|5|G|2822

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain R

eL19

Chain g

eL34