J3_6R5Q_014
3D structure
- PDB id
- 6R5Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex (post-state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAAG*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 6R5Q|1|5|C|4116, 6R5Q|1|5|U|4117, 6R5Q|1|5|U|4118, 6R5Q|1|5|C|4119, 6R5Q|1|5|U|4120, 6R5Q|1|5|G|4121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6R5Q_014 not in the Motif Atlas
- Homologous match to J3_8P9A_060
- Geometric discrepancy: 0.2759
- The information below is about J3_8P9A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28639.1
- Basepair signature
- cWW-tSS-F-cWW-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6R5Q|1|5|G|4091
6R5Q|1|5|G|4092
6R5Q|1|5|G|4093
6R5Q|1|5|G|4094
*
6R5Q|1|5|C|4114
6R5Q|1|5|G|4115
6R5Q|1|5|C|4116
6R5Q|1|5|U|4117
6R5Q|1|5|U|4118
6R5Q|1|5|C|4119
6R5Q|1|5|U|4120
6R5Q|1|5|G|4121
6R5Q|1|5|G|4122
6R5Q|1|5|C|4123
6R5Q|1|5|G|4124
6R5Q|1|5|C|4125
6R5Q|1|5|C|4126
6R5Q|1|5|A|4127
6R5Q|1|5|A|4128
6R5Q|1|5|G|4129
*
6R5Q|1|5|C|4155
6R5Q|1|5|G|4156
6R5Q|1|5|A|4157
6R5Q|1|5|C|4158
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain A
- uL2
- Chain G
- eL8
- Chain X
- uL23
- Chain Z
- 60S ribosomal protein L27
- Chain c
- eL30
- Chain g
- eL34
- Chain p
- ribosomal protein eL43
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