3D structure

PDB id
6R6G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of XBP1u-paused ribosome nascent chain complex with SRP.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
UGAACUA*UAG*CGAA
Length
14 nucleotides
Bulged bases
6R6G|1|5|A|1094, 6R6G|1|5|G|1201
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6R6G_004 not in the Motif Atlas
Homologous match to J3_8C3A_003
Geometric discrepancy: 0.1162
The information below is about J3_8C3A_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_39238.5
Basepair signature
cWW-tWH-cWW-tSW-F-F-cWW
Number of instances in this motif group
7

Unit IDs

6R6G|1|5|U|1091
6R6G|1|5|G|1092
6R6G|1|5|A|1093
6R6G|1|5|A|1094
6R6G|1|5|C|1095
6R6G|1|5|U|1096
6R6G|1|5|A|1097
*
6R6G|1|5|U|1182
6R6G|1|5|A|1183
6R6G|1|5|G|1184
*
6R6G|1|5|C|1200
6R6G|1|5|G|1201
6R6G|1|5|A|1202
6R6G|1|5|A|1203

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 1
X-box-binding protein 1
Chain A
uL2
Chain N
Ribosomal protein L15
Chain j
Ribosomal protein L37
Chain l
eL39

Coloring options:


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