J3_6R6G_004
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 6R6G|1|5|A|1094, 6R6G|1|5|G|1201
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6R6G_004 not in the Motif Atlas
- Homologous match to J3_8C3A_003
- Geometric discrepancy: 0.1162
- The information below is about J3_8C3A_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6R6G|1|5|U|1091
6R6G|1|5|G|1092
6R6G|1|5|A|1093
6R6G|1|5|A|1094
6R6G|1|5|C|1095
6R6G|1|5|U|1096
6R6G|1|5|A|1097
*
6R6G|1|5|U|1182
6R6G|1|5|A|1183
6R6G|1|5|G|1184
*
6R6G|1|5|C|1200
6R6G|1|5|G|1201
6R6G|1|5|A|1202
6R6G|1|5|A|1203
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 1
- X-box-binding protein 1
- Chain A
- uL2
- Chain N
- Ribosomal protein L15
- Chain j
- Ribosomal protein L37
- Chain l
- eL39
Coloring options: