3D structure

PDB id
6R6G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of XBP1u-paused ribosome nascent chain complex with SRP.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
UU*AGAAG*CGUGGA
Length
13 nucleotides
Bulged bases
6R6G|1|5|A|1342, 6R6G|1|5|U|1371
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6R6G_006 not in the Motif Atlas
Homologous match to J3_8P9A_051
Geometric discrepancy: 0.4613
The information below is about J3_8P9A_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_09667.1
Basepair signature
cWW-cWW-F-F-cSS-F-F-cWW
Number of instances in this motif group
2

Unit IDs

6R6G|1|5|U|1263
6R6G|1|5|U|1264
*
6R6G|1|5|A|1339
6R6G|1|5|G|1340
6R6G|1|5|A|1341
6R6G|1|5|A|1342
6R6G|1|5|G|1343
*
6R6G|1|5|C|1369
6R6G|1|5|G|1370
6R6G|1|5|U|1371
6R6G|1|5|G|1372
6R6G|1|5|G|1373
6R6G|1|5|A|1374

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain F
uL30
Chain T
eL21
Chain b
eL29

Coloring options:


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