J3_6R6G_008
3D structure
- PDB id
- 6R6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of XBP1u-paused ribosome nascent chain complex with SRP.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGAAGUG*CAA*UCUG
- Length
- 14 nucleotides
- Bulged bases
- 6R6G|1|5|A|1789
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6R6G_008 not in the Motif Atlas
- Homologous match to J3_5TBW_008
- Geometric discrepancy: 0.1573
- The information below is about J3_5TBW_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_10154.2
- Basepair signature
- cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F
- Number of instances in this motif group
- 3
Unit IDs
6R6G|1|5|C|1786
6R6G|1|5|G|1787
6R6G|1|5|A|1788
6R6G|1|5|A|1789
6R6G|1|5|G|1790
6R6G|1|5|U|1791
6R6G|1|5|G|1792
*
6R6G|1|5|C|2198
6R6G|1|5|A|2199
6R6G|1|5|A|2200
*
6R6G|1|5|U|2212
6R6G|1|5|C|2213
6R6G|1|5|U|2214
6R6G|1|5|G|2215
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain R
- 60S ribosomal protein L19
- Chain g
- eL34
Coloring options: